Hi CMS, I’ve just noticed that my IVT files have not been transferring to jasmin and the calc_IVT app has been failing (without actually failing!). Looks like a conda environment or library error - this is the output of job.err for calc_IVT: Traceback (most recent call last): File “/home/n02/n02…

UPDATE: I managed to get it to run by starting from scratch and re-creating the conda environment to resolve the conflicts between the install of netcdf4 and cf-python. For reference, the environment is /work/n02/n02/shakka/IVT_env2

Hi Ella There is a mix of python environments going on - the suite sets [[calc_IVT]] inherit = HPC_SERIAL pre-script = """ export PATH=/home/n02/n02/dch/cf/bin:$PATH export PYTHONPATH=/home/n02/n02/dch/cfdm:/home/n02/n02/dch/cf-python:$PYTHONPATH """ bu…

The problem in the other ticket was the same kind - the suite was mixing up python environments, so I suggested (indirectly) removing the init-script from HPC_SERIAL. The latest problem comes from mixing export PATH=/home/n02/n02/dch/cf/bin:$PATH export PYTHONPATH=/home/n02/n02/dch/cfdm:/home/n02/…

Hi Grenville, Thanks, I tried removing the path reference from calc_IVT in suite.rc and still got the same error, which makes me wonder if it is actually the install of netcdf or cf-python. Traceback (most recent call last): File “/work/n02/n02/shakka/IVT_env/lib/python3.9/site-packages/cfdm/cor…

Have you got cf-python in the IVT_env ?

I do, which is why getting rid of the reference to the shared cf python should work…

when i have activated just /IVT_env and module load cdo, it runs from the command line. So I guess the other version of cf-python is confusing everything (I’ve forgotten why it was in there)? I’ll try another suite reload…

Another update: I tried removing the call to the IVT_env and using only the cf-python install linked under HPC_SERIAL and get the following: Traceback (most recent call last): File “/work/n02/n02/shakka/create_IVT_vars.py”, line 2, in import cf File “/home/n02/n02/dch/cf-python/cf/init.py”, li…

And if I try with /IVT_env only, I get this netcdf-related issue again.

Tasks failing due to archer library errors

Unified Model

shakka 18 December 2023 11:43 3

Originally this was needed because it conflicted with my get_era5 environment, I think this is what you recommended here…?

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Tasks failing due to archer library errors

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