# Unable run rose suite

**URL:** <https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805>\
**Category:** Uncategorized\
**Tags:** ARCHER2\
**Created:** [23 November 2022 12:37 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805 "2022-11-23T12:37:07Z")\
**Posts on this page:** 9\
**Page:** 1

<div class="post-metadata">

**Author:** ![jgrist02](https://avatars.discourse-cdn.com/v4/letter/j/c57346/32.png) [@jgrist02](https://cms-helpdesk.ncas.ac.uk/u/jgrist02)\
**Post date:** [23 November 2022 12:37 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805/1 "2022-11-23T12:37:07Z")

</div>

Dear help,  
Previously was running rose-suite ok, but now (since puma new in use), just get error message as unable to run:

[INFO] 2022-11-23T12:30:45+0000 cylc get-global-config -i [hosts][localhost]run\ directory  
[INFO] 2022-11-23T12:30:45+0000 cylc get-global-config -i [hosts][localhost]work\ directory  
[INFO] 2022-11-23T12:30:45+0000 Configuration: /home/jgrist/roses/u-cr285/  
[INFO] 2022-11-23T12:30:45+0000 file: rose-suite.conf  
[INFO] 2022-11-23T12:30:45+0000 cylc --version  
[INFO] 2022-11-23T12:30:45+0000 export CYLC\_VERSION=7.8.12  
[INFO] 2022-11-23T12:30:45+0000 export ROSE\_ORIG\_HOST=pumanew.novalocal  
[INFO] 2022-11-23T12:30:45+0000 export ROSE\_SITE=  
[INFO] 2022-11-23T12:30:45+0000 export ROSE\_VERSION=2019.01.3  
[INFO] 2022-11-23T12:30:45+0000 create: log.20221123T123045Z  
[INFO] 2022-11-23T12:30:45+0000 delete: log  
[INFO] 2022-11-23T12:30:45+0000 symlink: log.20221123T123045Z \<= log  
[INFO] 2022-11-23T12:30:45+0000 tar -czf log.20221014T093215Z.tar.gz log.20221014T093215Z  
[INFO] 2022-11-23T12:30:56+0000 log.20221014T093215Z.tar.gz \<= log.20221014T093215Z  
[INFO] 2022-11-23T12:30:56+0000 delete: log.20221014T093215Z/  
[INFO] 2022-11-23T12:30:56+0000 create: log/suite  
[INFO] 2022-11-23T12:30:56+0000 create: log/rose-conf  
[INFO] 2022-11-23T12:30:56+0000 svn info --non-interactive  
[INFO] 2022-11-23T12:30:57+0000 svn status --non-interactive  
[INFO] 2022-11-23T12:30:57+0000 svn diff --internal-diff --non-interactive  
[INFO] 2022-11-23T12:30:57+0000 symlink: rose-conf/20221123T123056-run.conf \<= log/rose-suite-run.conf  
[INFO] 2022-11-23T12:30:57+0000 symlink: rose-conf/20221123T123056-run.version \<= log/rose-suite-run.version  
[INFO] 2022-11-23T12:30:57+0000 fcm info --xml fcm:um.xm\_tr/rose-stem/ana/mule\_cumf.py@vn11.6  
[INFO] 2022-11-23T12:30:57+0000 fcm info --xml fcm:ancil\_contrib.xm\_br/dev/simonwilson/r9929\_ozone\_pp\_header/OzoneConc/bin/redistribute\_ozone.sh  
[INFO] 2022-11-23T12:30:57+0000 fcm info --xml fcm:moci.xm\_tr/Utilities/ozone\_redistribution/retrieve\_ozone\_data.py@postproc\_2.4  
[INFO] 2022-11-23T12:30:57+0000 fcm info --xml fcm:ancil\_contrib.xm\_br/dev/simonwilson/r9929\_ozone\_pp\_header/OzoneConc/bin/redistribute\_ozone.py  
[INFO] 2022-11-23T12:30:57+0000 unchanged: README.ozone  
[INFO] 2022-11-23T12:30:57+0000 source: /home/jgrist/roses/u-cr285/README.ozone  
[INFO] 2022-11-23T12:30:57+0000 unchanged: ana/mule\_cumf.py  
[INFO] 2022-11-23T12:30:57+0000 source: svn://pumanew/um.xm\_svn/main/trunk/rose-stem/ana/mule\_cumf.py@81992 (fcm:um.xm\_tr/rose-stem/ana/mule\_cumf.py@vn11.6)  
[INFO] 2022-11-23T12:30:57+0000 unchanged: app  
[INFO] 2022-11-23T12:30:57+0000 source: /home/jgrist/roses/u-cr285/app  
[INFO] 2022-11-23T12:30:57+0000 unchanged: bin  
[INFO] 2022-11-23T12:30:57+0000 source: /home/jgrist/roses/u-cr285/bin  
[INFO] 2022-11-23T12:30:57+0000 unchanged: bin/redistribute\_ozone.py  
[INFO] 2022-11-23T12:30:57+0000 source: svn://pumanew/ancil.xm\_svn/contrib/branches/dev/simonwilson/r9929\_ozone\_pp\_header/OzoneConc/bin/redistribute\_ozone.py@13379 (fcm:ancil\_contrib.xm\_br/dev/simonwilson/r9929\_ozone\_pp\_header/OzoneConc/bin/redistribute\_ozone.py)  
[INFO] 2022-11-23T12:30:57+0000 unchanged: bin/redistribute\_ozone.sh  
[INFO] 2022-11-23T12:30:57+0000 source: svn://pumanew/ancil.xm\_svn/contrib/branches/dev/simonwilson/r9929\_ozone\_pp\_header/OzoneConc/bin/redistribute\_ozone.sh@13379 (fcm:ancil\_contrib.xm\_br/dev/simonwilson/r9929\_ozone\_pp\_header/OzoneConc/bin/redistribute\_ozone.sh)  
[INFO] 2022-11-23T12:30:57+0000 unchanged: bin/retrieve\_ozone\_data.py  
[INFO] 2022-11-23T12:30:57+0000 source: svn://pumanew/moci.xm\_svn/main/trunk/Utilities/ozone\_redistribution/retrieve\_ozone\_data.py@4419 (fcm:moci.xm\_tr/Utilities/ozone\_redistribution/retrieve\_ozone\_data.py@postproc\_2.4)  
[INFO] 2022-11-23T12:30:57+0000 unchanged: meta  
[INFO] 2022-11-23T12:30:57+0000 source: /home/jgrist/roses/u-cr285/meta  
[INFO] 2022-11-23T12:30:57+0000 unchanged: ozone-redistribution.rc  
[INFO] 2022-11-23T12:30:57+0000 source: /home/jgrist/roses/u-cr285/ozone-redistribution.rc  
[INFO] 2022-11-23T12:30:57+0000 unchanged: rose-suite.info  
[INFO] 2022-11-23T12:30:57+0000 source: /home/jgrist/roses/u-cr285/rose-suite.info  
[INFO] 2022-11-23T12:30:57+0000 unchanged: site  
[INFO] 2022-11-23T12:30:57+0000 source: /home/jgrist/roses/u-cr285/site  
[INFO] 2022-11-23T12:30:58+0000 source: /home/jgrist/roses/u-cr285/ana  
[INFO] 2022-11-23T12:30:58+0000 rsync -a --exclude=.\* --timeout=1800 --rsh=ssh\ -oBatchMode=yes --checksum /home/jgrist/roses/u-cr285/ana/ ana  
[INFO] 2022-11-23T12:30:58+0000 install: ana  
[INFO] 2022-11-23T12:30:58+0000 source: /home/jgrist/roses/u-cr285/ana  
[INFO] 2022-11-23T12:30:58+0000 delete: suite.rc  
[INFO] 2022-11-23T12:30:58+0000 install: suite.rc  
[INFO] 2022-11-23T12:30:58+0000 cylc register u-cr285 /home/jgrist/cylc-run/u-cr285  
[INFO] 2022-11-23T12:30:58+0000 REGISTERED u-cr285 → /home/jgrist/cylc-run/u-cr285  
[INFO] 2022-11-23T12:30:58+0000 cylc validate -o /tmp/tmpHXqwS4 --strict u-cr285  
[INFO] 2022-11-23T12:30:58+0000 Valid for cylc-7.8.12  
[INFO] 2022-11-23T12:30:58+0000 cylc get-config -ao -i [remote]owner -i [remote]host u-cr285  
[INFO] 2022-11-23T12:30:59+0000 bash -ec H=$(rose\ host-select\ pumanew.novalocal);\ echo\ $H  
[INFO] 2022-11-23T12:30:59+0000 ssh -oBatchMode=yes -n [jgrist02@login.archer2.ac.uk](mailto:jgrist02@login.archer2.ac.uk) env\ ROSE\_VERSION=2019.01.3\ CYLC\_VERSION=7.8.12\ bash\ -l\ -c\ '"$0"\ "$@"'\ rose\ suite-run\ -vv\ -n\ u-cr285\ –run=run\ –remote=uuid=3a3645d6-0150-42d6-96a6-aef5ef60da06,now-str=20221123T123045Z,root-dir='$DATADIR'

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<div class="post-metadata">

**Author:** ![grenville](https://dub1.discourse-cdn.com/flex013/user_avatar/cms-helpdesk.ncas.ac.uk/grenville/32/29_2.png) [@grenville](https://cms-helpdesk.ncas.ac.uk/u/grenville)\
**Post date:** [23 November 2022 13:06 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805/2 "2022-11-23T13:06:30Z")

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I don’t see an actual error - does the suite just hang?

What do you get on pumanew when you type:

`ssh login.archer2.ac.uk`

Grenville

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<div class="post-metadata">

**Author:** ![jgrist02](https://avatars.discourse-cdn.com/v4/letter/j/c57346/32.png) [@jgrist02](https://cms-helpdesk.ncas.ac.uk/u/jgrist02)\
**Post date:** [23 November 2022 13:24 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805/3 "2022-11-23T13:24:18Z")

</div>

From puma:

/home/jgrist/roses

-bash-4.2$ ssh [login.archer2.ac.uk](http://login.archer2.ac.uk)

Enter passphrase for key ‘/home/jgrist/.ssh/id\_rsa\_archerum’:

jeremy

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<div class="post-metadata">

**Author:** ![grenville](https://dub1.discourse-cdn.com/flex013/user_avatar/cms-helpdesk.ncas.ac.uk/grenville/32/29_2.png) [@grenville](https://cms-helpdesk.ncas.ac.uk/u/grenville)\
**Post date:** [23 November 2022 13:39 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805/4 "2022-11-23T13:39:46Z")

</div>

You need to add the archerum key to the ssh agent - you may need to delete `~/.ssh/environment.pumanew.novalocal`

Grenville

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<div class="post-metadata">

**Author:** ![jgrist02](https://avatars.discourse-cdn.com/v4/letter/j/c57346/32.png) [@jgrist02](https://cms-helpdesk.ncas.ac.uk/u/jgrist02)\
**Post date:** [23 November 2022 17:17 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805/5 "2022-11-23T17:17:59Z")

</div>

Hi Grenville,

I removed `~/.ssh/environment.pumanew.novalocal`

And then did:

ssh-add ~/.ssh/id\_rsa\_archerum

but still have problems running:

do I have to regenerate the id\_rsa\_aracherum

 ![image001.png](https://europe1.discourse-cdn.com/flex013/uploads/cms_support/original/1X/11f23336a4396e7d5a1ca75449bd2fb8b9379346.png)

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<div class="post-metadata">

**Author:** ![RosalynHatcher](https://dub1.discourse-cdn.com/flex013/user_avatar/cms-helpdesk.ncas.ac.uk/rosalynhatcher/32/11_2.png) [@RosalynHatcher](https://cms-helpdesk.ncas.ac.uk/u/RosalynHatcher)\
**Post date:** [23 November 2022 17:32 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805/6 "2022-11-23T17:32:39Z")

</div>

Hi,

What output do you get now when you run `ssh login.archer2.ac.uk` on pumanew?

Cheers,  
Ros.

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<div class="post-metadata">

**Author:** ![jgrist02](https://avatars.discourse-cdn.com/v4/letter/j/c57346/32.png) [@jgrist02](https://cms-helpdesk.ncas.ac.uk/u/jgrist02)\
**Post date:** [25 November 2022 10:01 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805/7 "2022-11-25T10:01:55Z")

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Hi Ros,

Met Office Science Repository Service password:

Subversion password cached

[https://code.metoffice.gov.uk/rosie/u/hello:](https://code.metoffice.gov.uk/rosie/u/hello:) Hello jeremygrist

Rosie password cached

-bash-4.2$ ssh [login.archer2.ac.uk](http://login.archer2.ac.uk)

Enter passphrase for key ‘/home/jgrist/.ssh/id\_rsa\_archerum’:

Does this mean I have to regenerate id\_rsa\_archerum?

Jeremy

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<div class="post-metadata">

**Author:** ![grenville](https://dub1.discourse-cdn.com/flex013/user_avatar/cms-helpdesk.ncas.ac.uk/grenville/32/29_2.png) [@grenville](https://cms-helpdesk.ncas.ac.uk/u/grenville)\
**Post date:** [25 November 2022 11:40 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805/8 "2022-11-25T11:40:03Z")

</div>

Jeremy

It probably means you need to add the archerum key to the ssh agent.  
If you don’t see archerum mentioned when you type (on pumanew)  
`ssh-add -l`  
then

```auto
cd ~/.ssh
ssh-add id_rsa_archerum

```

then try accessing archer2 again

Grenville

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<div class="post-metadata">

**Author:** ![jgrist02](https://avatars.discourse-cdn.com/v4/letter/j/c57346/32.png) [@jgrist02](https://cms-helpdesk.ncas.ac.uk/u/jgrist02)\
**Post date:** [25 November 2022 14:31 UTC](https://cms-helpdesk.ncas.ac.uk/t/unable-run-rose-suite/805/9 "2022-11-25T14:31:05Z")

</div>

Hi Grenville,

Thanks – seem to be back at it now.

Jeremy