When I investigate the file permissions, it looks like the following:
So as expected, the rose-run file doesn’t have the execute permissions it needs.
The only reference I can find to rose-run within the cylc-src/suite is: app/jules/rose-app.conf:default=rose-run jules.exe app/jules/rose-app.conf:rivers-only=rose-run river.exe
(along with .svn files)
And the references within cylc-run/suite are: run1/log/version/uncommitted.diff: default=rose-run jules.exe run1/log/job/1/jules_1/01/job.out:[INFO] command: rose-run jules.exe run1/log/job/1/jules_1/01/job.err:/bin/sh: line 1: /home/users/zaracra/cylc-run/u-dz272/run1/share/fcm_make/build/bin/rose-run: Permission denied run1/log/job/1/jules_1/01/job.err:[FAIL] rose-run jules.exe # return-code=126 run1/app/jules/rose-app.conf:default=rose-run jules.exe run1/app/jules/rose-app.conf:rivers-only=rose-run river.exe
One of my colleagues followed the same steps as me for checking out and running the suite and didn’t encounter this permissions issue for rose-run, so it must be something to do with my system.
Thank you in advance for your help with resolving this error!
I can see that the rose-run file generated under share/fcm_make/build/bin does not have execute permissions and this explains the Permission denied error.
Since you mentioned that your colleague has a working copy of the same suite could you please send the output of the following command for their working copy?
ls -l <path-example>/share/fcm_make/build/bin/rose-run
We can check whether their fcm_make build has generated rose-run with different permissions before we change anything in your build.
chmod +x ~/MODELS/jules/bin/rose-run
ls -l ~/MODELS/jules/bin/rose-run
Thi will show something like:
-rwxr-xr-x ... rose-run
After that, could you rerun the fcm_make task and then check this
ls -l ~/cylc-run/u-dz272/run1/share/fcm_make/build/bin/rose-run
If that now also has execute permission, please retrigger the failed JULES task and let me know how it goes.
Since your colleague did not encounter the same issue, it would be useful to know how you created or got the copy the ~/MODELS/jules directory. That may explain why the executable permissions were lost.
When my colleague ran the suggested line, she got the following:
I updated the execute permissions on ~/MODELS/jules/bin/rose-run as suggested, and when I reran the fcm_make, the permissions for rose-run came out correct!
[zaracra@cylc2 ~]$ ls -l ~/cylc-run/u-dz272/run2/share/fcm_make/build/bin/rose-run -rwxr-xr-x 1 zaracra users 1315 Aug 28 09:43 /home/users/zaracra/cylc-run/u-dz272/run2/share/fcm_make/build/bin/rose-run
My ~/MODELS/jules directory is a recent (only yesterday) re-download of JULES from GitHub.
