Hi Martin:
Did you get it working yet?
Patrick
Hi Patrick,
I didn’t get a chance to try again this week, working on this big grant for August. I will try and have another crack next week once I have more words on the page and feel I can multi-task again. I appreciate you following up, be assured I will be following this up.
Martin
Hi Patrick,
OK running now, I will update soon.
M
Hi,
It failed at the plotting stage again. I’ve checked and all the sites worked fine so I’ve triggered the plotting script again, it has just been submitted.
M
It looks like you’re using a different version of cylc than I am.
Your job script for make_plots:
~mdekauwe/cylc-run/u-co635v2/log/job/1/make_plots/02/job
has:
export CYLC_DIR='/apps/jasmin/metomi/cylc-7.8.7'
whereas a recent version that I think worked for me:
~/cylc-run/u-al752currentworking8/log/job/1/make_plots/01/job
has:
export CYLC_DIR='/apps/contrib/metomi/cylc-7.8.1'
Maybe you can fix this by changing your .bashrc file so that it has:
export PATH=/apps/contrib/metomi/bin:$PATH
instead of:
export PATH=$PATH:/apps/contrib/metomi/bin
then:
- log out of
cylc1and log back in cd ~/roses/u-co635v2-
rose suite-run --reload. (or maybe you need to dorose suite-run --restart) rose sgc- retrigger your
make_plotsapp, by right clicking on it and choosing the retrigger option -
grep CYLC_DIR= ~/cylc-run/u-co635v2/log/job/1/make_plots/03/job(or whatever version you are using instead of 03) - the grep should maybe say (if it doesn’t, then maybe something didn’t work as planned):
export CYLC_DIR='/apps/contrib/metomi/cylc-7.8.1' - maybe it will run properly then. Please let me know.
- if it doesn’t work, I might then suggest starting the suite new again, either with
rose suite-run --newor by making/running a new copy of the suite withrosieor maybe just with a linux command-line copy.
Patrick
Hi Martin:
Is it working better now?
Patrick
Hi Patrick,
I just checked and no luck, it failed at the plotting step again. So, that should rule out differences in the cycl, as I’ve matched that step and I started a brand new run.
Thanks,
Martin
Hi Martin:
Maybe you can try putting some print statements especially at the beginning of the file:
/home/users/mdekauwe/cylc-run/u-co635v2/bin/make_plots.py
in order to ensure that the Python interpreter is actually properly getting into this file and then crashing?
After you put the print statements in there, you can retrigger the make_plots app in the cylc GUI. I don’t think that you need to do a rose suite-run --reload. The output of the print statements will be in the job.out log file:
/home/users/mdekauwe/cylc-run/u-co635v2/log/job/1/make_plots/NN/job.out
I think the NN version of the job.out file is the latest version.
Patrick
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Hi Martin
Did you ever get this working?
Patrick
Hi Martin
I noticed an issue with make_plots for the u-al752 suite on JASMIN. Since your ticket has been closed, I just reopened the ticket, to respond properly.
The make_plots app fails for some weird reason unless this line is deleted in the [[PLOTTING_CEDA_JASMIN]] section of site/suite.rc.CEDA_JASMIN :
env | grep LD_LIBRARY_PATH
Does that help you?
Patrick
Hi Patrick
Will test and let you know.
Martin
Hi Patrick,
I can confirm that it the whole suite ran for me when that line was removed.
Thanks,
Martin
Hi Martin:
I am very glad to hear that it works now!
The jinja language used in Rose/Cylc must be doing something that I don’t currently understand when the env | grep LD_LIBRARY_PATH is executed for an empty LD_LIBRARY_PATH path. I think that this line of code is not absolutely necessary, so I am deleting it now from the code for the u-al752 suite. The checked-in MOSRS version of this suite now doesn’t have this line of code.
There is a similar line of code elsewhere in the suite’s environment settings, where LD_LIBRARY_PATH contains actual directory names, and that seems to work fine.
Patrick